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1

Evaluating presence–absence models in ecology: the need to account for prevalence

Stéphanie Manel, H. Ceri Williams, S.J. Ormerod

Journal:

Journal of Applied Ecology

Year:

2001

Language:

english

File:

PDF, 291 KB

english, 2001

2

Odonates as Indicators of Shallow Lake Restoration by Liming: Comparing Adult and Larval Responses

F. D'Amico, Stéphanie Darblade, S. Avignon, Stéphanie Blanc-Manel, S. J. Ormerod

Journal:

Restoration Ecology

Year:

2004

Language:

english

File:

PDF, 167 KB

english, 2004

3

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

Guillaume Lentendu, Lucie Zinger, Stéphanie Manel, Eric Coissac, Philippe Choler, Roberto A. Geremia, Christelle Melodelima

Journal:

Fungal Diversity

Year:

2011

Language:

english

File:

PDF, 512 KB

english, 2011

4

Adaptive Genetic Variation on the Landscape: Methods and Cases

Schoville, Sean D., Bonin, Aurélie, François, Olivier, Lobreaux, Stéphane, Melodelima, Christelle, Manel, Stéphanie

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

5

Taxonomic, spatial and adaptive genetic variation ofBetasectionBeta

Andrello, Marco, Henry, Karine, Devaux, Pierre, Desprez, Bruno, Manel, Stéphanie

Journal:

Theoretical and Applied Genetics

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

6

An integrated framework to identify wildlife populations under threat from climate change

Razgour, Orly, Taggart, John B., Manel, Stephanie, Juste, Javier, Ibáñez, Carlos, Rebelo, Hugo, Alberdi, Antton, Jones, Gareth, Park, Kirsty

Journal:

Molecular Ecology Resources

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

7

Alternative methods for predicting species distribution: an illustration with Himalayan river birds

Stéphanie Manel, J.M. Dias, S.T. Buckton, S.J. Ormerod

Journal:

Journal of Applied Ecology

Year:

1999

Language:

english

File:

PDF, 202 KB

english, 1999

8

Detecting Wildlife Poaching: Identifying the Origin of Individuals with Bayesian Assignment Tests and Multilocus Genotypes

Stéphanie Manel, Pierre Berthier, Gordon Luikart

Journal:

Conservation Biology

Year:

2002

Language:

english

File:

PDF, 577 KB

english, 2002

9

The effect of climate on masting in the European larch and on its specific seed predators

Benedicte N. Poncet, Philippe Garat, Stephanie Manel, Noëlle Bru, Jean-Marie Sachet, Alain Roques, Laurence Despres

Journal:

Year:

2009

Language:

english

File:

PDF, 328 KB

english, 2009

10

Applications of landscape genetics in conservation biology: concepts and challenges

Gernot Segelbacher, Samuel A. Cushman, Bryan K. Epperson, Marie-Josée Fortin, Olivier Francois, Olivier J. Hardy, Rolf Holderegger, Pierre Taberlet, Lisette P. Waits, Stéphanie Manel

Journal:

Conservation Genetics

Year:

2010

Language:

english

File:

PDF, 227 KB

english, 2010

11

Combining demography and genetic analysis to assess the population structure of an amphibian in a human-dominated landscape

Toni Safner, Claude Miaud, Oscar Gaggiotti, Samuel Decout, Delphine Rioux, Stéphanie Zundel, Stéphanie Manel

Journal:

Conservation Genetics

Year:

2011

Language:

english

File:

PDF, 575 KB

english, 2011

12

Matrix configuration and patch isolation influences override the species–area relationship for urban butterfly communities

Marie-Hélène Lizée, Stéphanie Manel, Jean-François Mauffrey, Thierry Tatoni, Magali Deschamps-Cottin

Journal:

Landscape Ecology

Year:

2012

Language:

english

File:

PDF, 460 KB

english, 2012

13

Integrative approach for landscape-based graph connectivity analysis: a case study with the common frog (Rana temporaria) in human-dominated landscapes

Samuel Decout, Stéphanie Manel, Claude Miaud, Sandra Luque

Journal:

Landscape Ecology

Year:

2012

Language:

english

File:

PDF, 996 KB

english, 2012

14

Temporal and spatial analyses disclose consequences of habitat fragmentation on the genetic diversity in capercaillie (Tetrao urogallus)

GERNOT SEGELBACHER, STÉPHANIE MANEL, JÜRGEN TOMIUK

Journal:

Molecular Ecology

Year:

2008

Language:

english

File:

PDF, 157 KB

english, 2008

15

Perspectives and challenges in landscape genetics

STÉPHANIE MANEL, GERNOT SEGELBACHER

Journal:

Molecular Ecology

Year:

2009

Language:

english

File:

PDF, 66 KB

english, 2009

16

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

BÉNÉDICTE N. PONCET, DORIS HERRMANN, FELIX GUGERLI, PIERRE TABERLET, ROLF HOLDEREGGER, LUDOVIC GIELLY, DELPHINE RIOUX, WILFRIED THUILLER, SERGE AUBERT, STÉPHANIE MANEL

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 410 KB

english, 2010

17

Utility of computer simulations in landscape genetics

BRYAN K. EPPERSON, BRAD H. MCRAE, KIM SCRIBNER, SAMUEL A. CUSHMAN, MICHAEL S. ROSENBERG, MARIE-JOSÉE FORTIN, PATRICK M. A. JAMES, MELANIE MURPHY, STÉPHANIE MANEL, PIERRE LEGENDRE, MARK R. T. DALE

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 355 KB

english, 2010

18

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

STÉPHANIE MANEL, STÉPHANE JOOST, BRYAN K. EPPERSON, ROLF HOLDEREGGER, ANDREW STORFER, MICHAEL S. ROSENBERG, KIM T. SCRIBNER, AURÉLIE BONIN, MARIE-JOSÉE FORTIN

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 204 KB

english, 2010

19

History or ecology? Substrate type as a major driver of patial genetic structure in Alpine plants

Nadir Alvarez, Conny Thiel-Egenter, Andreas Tribsch, Rolf Holderegger, Stéphanie Manel, Peter Schönswetter, Pierre Taberlet, Sabine Brodbeck, Myriam Gaudeul, Ludovic Gielly, Philippe Küpfer, Guilhem M

Journal:

Ecology Letters

Year:

2009

Language:

english

File:

PDF, 324 KB

english, 2009

20

Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect

Stéphanie Manel, Cyrille Conord, Laurence Després

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 266 KB

english, 2009

21

Forecasting changes in population genetic structure of alpine plants in response to global warming

FLORA JAY, STÉPHANIE MANEL, NADIR ALVAREZ, ERIC Y. DURAND, WILFRIED THUILLER, ROLF HOLDEREGGER, PIERRE TABERLET, OLIVIER FRANÇOIS

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

22

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

STÉPHANIE MANEL, FELIX GUGERLI, WILFRIED THUILLER, NADIR ALVAREZ, PIERRE LEGENDRE, ROLF HOLDEREGGER, LUDOVIC GIELLY, PIERRE TABERLET, IntraBioDiv Consortium

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 360 KB

english, 2012

23

Contrasting diffusion of Quaternary gene pools across Europe: The case of the arctic–alpine Gentiana nivalis L. (Gentianaceae)

Nadir Alvarez, Stéphanie Manel, Thomas Schmitt

Journal:

Flora - Morphology, Distribution, Functional Ecology of Plants

Year:

2012

Language:

english

File:

PDF, 716 KB

english, 2012

24

Landscape genetics of plants

Rolf Holderegger, Dominique Buehler, Felix Gugerli, Stéphanie Manel

Journal:

Trends in Plant Science

Year:

2010

Language:

english

File:

PDF, 276 KB

english, 2010

25

Assignment methods: matching biological questions with appropriate techniques

Stephanie Manel, Oscar E. Gaggiotti, Robin S. Waples

Journal:

Trends in Ecology & Evolution

Year:

2005

Language:

english

File:

PDF, 148 KB

english, 2005

26

Landscape genetics: combining landscape ecology and population genetics

Stéphanie Manel, Michael K. Schwartz, Gordon Luikart, Pierre Taberlet

Journal:

Trends in Ecology & Evolution

Year:

2003

Language:

english

File:

PDF, 202 KB

english, 2003

27

Logistic regression and continuation ratio models to estimate insect development under variable temperatures

Stéphanie Manel, Domitien Debouzie

Journal:

Ecological Modelling

Year:

1997

Language:

english

File:

PDF, 484 KB

english, 1997

28

Comparing discriminant analysis, neural networks and logistic regression for predicting species distributions: a case study with a Himalayan river bird

Stéphanie Manel, Jean-Marie Dias, Steve J. Ormerod

Journal:

Ecological Modelling

Year:

1999

Language:

english

File:

PDF, 128 KB

english, 1999

29

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

De Mita, Stéphane, Thuillet, Anne-Céline, Gay, Laurène, Ahmadi, Nourollah, Manel, Stéphanie, Ronfort, Joëlle, Vigouroux, Yves

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 759 KB

english, 2013

30

Brownian models and coalescent structures

Michael G.B. Blum, Christophe Damerval, Stephanie Manel, Olivier François

Journal:

Theoretical Population Biology

Year:

2004

Language:

english

File:

PDF, 323 KB

english, 2004

31

Ten years of landscape genetics

Manel, Stéphanie, Holderegger, Rolf

Journal:

Trends in Ecology & Evolution

Year:

2013

Language:

english

File:

PDF, 993 KB

english, 2013

32

Genotype – environment correlations in corals from the Great Barrier Reef

Petra Lundgren, Juan C Vera, Lesa Peplow, Stephanie Manel…

Journal:

Year:

2013

Language:

english

File:

PDF, 1.78 MB

english, 2013

33

INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

Jones, Matthew R., Forester, Brenna R., Teufel, Ashley I., Adams, Rachael V., Anstett, Daniel N., Goodrich, Betsy A., Landguth, Erin L., Joost, Stéphane, Manel, Stéphanie

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

34

Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates

Shore, Joel, Herrmann, Doris, Poncet, Bénédicte N., Manel, Stéphanie, Rioux, Delphine, Gielly, Ludovic, Taberlet, Pierre, Gugerli, Felix

Journal:

Year:

2010

File:

PDF, 224 KB

2010

35

Genetic connectivity of the grey partridge in central northern France in a highly man dominated landscape

Bech, Nicolas, Manel, Stéphanie, Bro, Elisabeth, Novoa, Claude, Bijaoui-Georget, Benjamin-Marc, Beltran-Bech, Sophie, Boissier, Jérôme

Journal:

Conservation Genetics

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

36

Reply to Kershaw and Rosenbaum

Manel, Stéphanie, Holderegger, Rolf

Journal:

Trends in Ecology & Evolution

Year:

2014

Language:

english

File:

PDF, 211 KB

english, 2014

37

Effects of built landscape on taxonomic homogenization: Two case studies of private gardens in the French Mediterranean

Bossu, Angèle, Marco, Audrey, Manel, Stéphanie, Bertaudière-Montes, Valérie

Journal:

Landscape and Urban Planning

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

38

The Dilemma of Female Mate Selection in the Brown Bear, a Species with Sexually Selected Infanticide

Eva Bellemain, Andreas Zedrosser, Stéphanie Manel, Lisette P. Waits, Pierre Taberlet and Jon E. Swenson

Journal:

Proceedings Biological Sciences

Year:

2006

Language:

english

File:

PDF, 1.88 MB

english, 2006

39

Microsatellite Primers in Parietaria judaica (Urticaceae) to Assess Genetic Diversity and Structure in Urban Landscapes

Bossu, Angèle, Bertaudière-Montès, Valérie, Dubut, Vincent, Manel, Stéphanie

Journal:

Applications in Plant Sciences

Year:

2014

Language:

english

File:

PDF, 493 KB

english, 2014

40

Tethered η 5 -Oxocyclohexadienyl Piano-Stool Ruthenium(II) Complexes: A New Class of Catalysts?

Kechaou-Perrot, Manel, Vendier, Laure, Bastin, Stéphanie, Sotiropoulos, Jean-Marc, Miqueu, Karinne, Menéndez-Rodríguez, Lucía, Crochet, Pascale, Cadierno, Victorio, Igau, Alain

Journal:

Organometallics

Year:

2014

Language:

english

File:

PDF, 765 KB

english, 2014

41

Development of an Arabis alpina genomic contig sequence data set and application to single nucleotide polymorphisms discovery

Lobréaux, Stéphane, Manel, Stephanie, Melodelima, Christelle

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 525 KB

english, 2014

42

Extending networks of protected areas to optimize connectivity and population growth rate

Andrello, Marco, Jacobi, Martin Nilsson, Manel, Stéphanie, Thuiller, Wilfried, Mouillot, David

Journal:

Year:

2015

Language:

english

File:

PDF, 5.10 MB

english, 2015

43

Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas

Andrello, Marco, Mouillot, David, Somot, Samuel, Thuiller, Wilfried, Manel, Stéphanie, Bode, Michael

Journal:

Diversity and Distributions

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

44

MetaPopGen: an r package to simulate population genetics in large size metapopulations

Andrello, Marco, Manel, Stéphanie

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 562 KB

english, 2015

45

Comparison of Bayesian Clustering and Edge Detection Methods for Inferring Boundaries in Landscape Genetics

Safner, Toni, Miller, Mark P., McRae, Brad H., Fortin, Marie-Josée, Manel, Stéphanie

Journal:

International Journal of Molecular Sciences

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

46

Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

Joost, Stéphane, Vuilleumier, Séverine, Jensen, Jeffrey D., Schoville, Sean, Leempoel, Kevin, Stucki, Sylvie, Widmer, Ivo, Melodelima, Christelle, Rolland, Jonathan, Manel, Stéphanie

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 288 KB

english, 2013

47

Land ahead: using genome scans to identify molecular markers of adaptive relevance

Holderegger, Rolf, Herrmann, Doris, Poncet, Bénédicte, Gugerli, Felix, Thuiller, Wilfried, Taberlet, Pierre, Gielly, Ludovic, Rioux, Delphine, Brodbeck, Sabine, Aubert, Serge, Manel, Stéphanie

Journal:

Plant Ecology & Diversity

Year:

2008

Language:

english

File:

PDF, 733 KB

english, 2008

48

Combining Niche Modelling and Landscape Genetics to Study Local Adaptation: A Novel Approach Illustrated using Alpine Plants

Rolland, Jonathan, Lavergne, Sébastien, Manel, Stéphanie

Journal:

Perspectives in Plant Ecology, Evolution and Systematics

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

49

Evaluating Presence-Absence Models in Ecology: The Need to Account for Prevalence

Stéphanie Manel, H. Ceri Williams and S. J. Ormerod

Journal:

Journal of Applied Ecology

Year:

2001

Language:

english

File:

PDF, 2.02 MB

english, 2001

50

Alternative Methods for Predicting Species Distribution: An Illustration with Himalayan River Birds

Stephanie Manel, J. M. Dias, S. T. Buckton and S. J. Ormerod

Journal:

Journal of Applied Ecology

Year:

1999

Language:

english

File:

PDF, 1.45 MB

english, 1999